Extending the concept of entropy-negentropy for the assessment of ecological dominance and diversity at alpha, beta and gamma levels

ABSTRACT Several measures of ecological diversity have been defined at alpha, beta, and gamma levels and less attention has been paid to characterise their ecological dominance. In this paper, we extend the concept of negative entropy (negentropy) for the measurement of ecological dominance and diversity at the three hierarchical levels of community characterization. Negentropy is a measure of energy, and gives a convex curve for binary negentropy function, whereas Shannon’s entropy gives a typical concave curve. Similarly, we have defined indices for Simpson’s and Brillouin’s dominance functions at alpha, beta and gamma levels. The results of diversity indices followed a trend for different sites as: Harike > Beas > Goindwal Sahib, while trend obtained for dominance is Goindwal Sahib > Beas > Harike. The pooled results of both indicated that Harike showed maximum ecological information by the application of Shannon’s diversity and Simpson’s inverse diversity, while results of Simpson’s diversity remain same for all sites.


Introduction
The vital objective of ecology is to delineate the mechanisms which are essential for the sustainability of ecosystems (Tilman et al., 2014). Any damage to biodiversity destroys the functionality of ecosystems, and in severe circumstances leads to the mass extinction of species and the loss of whole ecosystems (Dunne & Williams, 2009). Biodiversity in its widest sense is defined as the variety of life forms at different levels, ranging from the organismic levels to the species (DeLong, 1996;Pandita et al., 2019). By applying diversity indices, we can compare diverse spatial sites and temporal periods etc. (Daly et al., 2018). These measures are thus important tools for ecological monitoring and conservation, and to deal with any biodiversity calamity (Morris et al., 2014). Ecological dominance and diversity are extensively used community features at alpha, beta and gamma levels (Thukral et al., 2019), and these diversity measures are widely applied in the ecology from the last few decades (Semeniuk &, Cresswell 2013). Some of the measures used for the determination of community diversity are Shannon's entropy (Shannon-Weiner's index) (Shannon, 1948), Simpson's index (Simpson, 1949), Brillouin's index (Brillouin, 1953(Brillouin, , 1962), Renyi's entropy (Renyi, 1961), Berger-Parker's index (Berger & Parker, 1970) etc.

Dominance
Common indices used for the measurement of dominance are Simpson's index, Berger-Parker index and McIntosh index. Entropy as a measure of diversity Shannon's entropy (H') is one of the most preferred measures of diversity, and is given by the equation, where p i is the probability of occurrence of a species, and K is the number of species in a community.
Simpson's index of diversity (C') and Simpson's inverse index of diversity (D') are represented by the equation as: Simpson's index of dominance (C) is also known as Simpson's index with replacement and is used if the sample is quite large.
where, p i is probability of occurrence of a species in the community, K is the number of species and n i is the number of individuals of the i th species, and N is the total number of individuals of all the species. The maximum value of Simpson's index for a single species community is 1, and the minimum value for an evenly distributed species is (1/K) 2 . If the sample size is small, Simpson's index of dominance without replacement is used, Berger-Parker index of dominance (D BP ) is the proportion of number of individuals of the dominant species (n D ) to the total number of individuals of all the species (N), For a single species community, the value of Berger-Parker dominance index is 1 (maximum), and for an evenly distributed community, the value is 1/K, where K is the number of species. McIntosh's U is a dominance index, where pi represents the proportional number of individuals of different species present in a community.

Relation between entropy and negentopy
The concept of negative entropy was given by Schrödinger (1944), and later elaborated by Brillouin (1953), who introduced the term negentropy. Among all the probability distributions, normal distribution has the maximum entropy, negentropy is always nonnegative (Quarati et al., 2016). The relation between entropy (S) and negentropy (J) of a system is given by the equation, where, S max is the maximum entropy possible. This also implies that sum of entropy and negentropy of a system is equal to the theoretical maximum entropy, i.e.,

J þ S ¼ S max
If entropy measures order in a system, negentropy measures the disorder. Negentropy may also be treated as the energy not utilised (E') by the system and available for work, i.e., J ¼ E 0 . Because, maximum order and maximum disorder are equal, we have S max ¼ E 0 max . Thus, in terms of energy, we can rewrite the entropy equation as, In ecological systems, dominance and diversity characterize the numerical structure of different species. Shannon's index of diversity (H') is a measure of entropy. Since a community with even distribution of species has the maximum entropy (H' max ), we can extend the concept of negentropy (E') to the study of ecological dominance: Diversity and dominance are two inseparable aspects of biological community studies, and are generally studied together. However, diversity indices are more common in literature (Kumar et al., 2017;Parkash & Thukral, 2010;Sarangal et al., 2012;Thukral, 2017). Further, community characterization at β and γ levels is generally restricted to diversity only, some of the indices used are given in (Table 1). The present work, therefore, focuses on defining new ecological dominance indices at alpha level, and extending the concept of ecological dominance at β and γ levels.

Levels of diversity
Community diversity can be studied at three levels, alpha (α), beta (β) and gamma (γ). Alpha diversity is defined as the diversity of a single sample or community. For a landscape consisting of M communities, Shannon's α diversity, α H 0 ð Þ, is the average community diversity: Similarly, Simpson's α diversity of a landscape α (C'), Simpson's inverse alpha diversity α(D'), and Brillouin's α diversity α(H) consisting of M communities may be defined, respectively, as, Gamma diversity is the diversity of the landscape consisting of two or more communities considering that the landscape is a single community. The relationship between α, β and γ diversities may be described using additive or multiplicative models (Whittaker, 1972). The additive model gives the value of γ diversity as, where, β diversity is the difference of diversities at two levels (γ-α). The entropies at α and γ levels cannot be negative, but their difference, mentioned in this manuscript as (β add ) diversity, can be positive, negative or zero. Using the additive model, Shannon's β diversity, β(H') of a landscape consisting of M communities, may also be written as, where, α(H'), β(H') and γ(H') are Shannon's additive α, β, and γ diversities, respectively. The multiplicative model is based on effective number of species in a community (β mult. ) i.e., e H' . For α, β and γ Shannon's entropies, the multiplicative beta diversity is.
where e is ratio of two diversities and is given by e γ =e α . Shannon's multiplicative model is also written as: where, α(H'), β(H') and γ(H') are the exponential functions, e α , e β and e γ of the three diversities respectively. Similarly, the additive model for Simpson's β diversity, β(C'), Simpson's inverse β diversity, β(D'), Brillouin's β diversity, β(H) of a landscape consisting of M communities, may be defined, respectively, as, We have similarly defined the dominance equations at α, β and γ levels. In this paper we have used only the additive models of entropy and negentropy for diversity and dominance measurements. We have used our models in different communities under four hypothetical situations: (1) Each community having one different species with equal number of individuals of each species.
(2) Only one species having equal number of individuals in all the communities.

Derivation of negentropic indices of dominance
In this paper, we extend the concept of negentropy to the study of community dominance and diversity at alpha, beta and gamma levels. We have used Euler's constant (e) as the base for logarithm to give entropy or negentropy in nats for Shannon's and Brillouin's indices. Alternatively, the logarithms could be used with base 2 (units as bits or Shannon's), or base 10 (units as decits). Using Shannon's entropy, we define negentropic index of dominance (E'), as follows: where, E' is the negentropy, H' is the entropy or diversity, and H' max is the theoretical maximum entropy of the community if all the species are evenly distributed. If a community consists of K species, maximum Shannon's diversity is given as H 0 max ¼ ln K, therefore, We have given the negentropies derived as measures of dominance in (Table 2). For a landscape consisting of M communities, α dominance may be defined as the average community dominance: where E' j is negentropy of the j th community. Negentropic β dominance, β(E') of a landscape consisting of M communities, may be defined as, is negentropic dominance index of the landscape. Like Shannon's entropy, the negentropies, α and γ, are non-negative, but the negentropy β add: E 0 ð Þ can be positive, negative or zero, depending on the magnitudes of α and γ negentropies. Negentropies for Simpson's dominance (C), Simpson's inverse dominance (D) and Brillouin's dominance (E) may be defined accordingly at β and γ levels:

Binary entropy and negentropy functions
Binary entropy function is the Shannon's entropy of a 2-class variable, with the probabilities of the two states being p and q, such that q = 1 -p (Guedes et al., 2016). The entropy of this variable is given as, Binary entropy was calculated for different values of p varying from 0 to 1, and a plot between entropy (H') and probability of the first class (p) is called binary entropy function plot (Figure 1). We can extend the binary entropy function to binary negentropy function using the relation, E 0 ¼ ln 2 À ðp ln p þ q ln qÞ: A plot between the negentropy (E') and the probability (p) may be called binary negentropy function. Binary entropy plot between probability and Shannon's entropy gives a typical concave curve, whereas binary negentropy plot gives a convex curve (Figure 1). Binary entropy plot may also be called binary information plot in a wider sense of usage. (Figure 1) depicts that in the initial phase when Shannon's entropy increases then negentropy or dominance decreases, but at the end Shannon's entropy declines, while negentropy or dominance increases. In information theory, entropy is regarded as a measure of uncertainty. To put it instinctively, suppose pi = 0, the event is assured never happen, and thus there is no ambiguity at all, leading to entropy of zero. If pi = 1, the result is again definite; consequently, the entropy is zero as well. In case of pi = ½, the results indicate that ambiguity is maximum, if one were to place a fair bet on the outcome in this case, there is no benefit to be added with earlier gen of the probabilities. In this case, the entropy is highest at value of 1 bit. Intermediary values falls between these cases. For example, if pi = ¼, there is tranquil a measure of ambiguity on the result, but one can still foresee the result appropriately more frequently than not, so the ambiguity measure or entropy, is less than 1 full bit. (Figure 2) gives binary information plot between the information and probability of a two-class variable for Simpson's dominance (C) and diversity (C').
Simpson's C gives a convex energy curve, like that of Shannon's negentropy, whereas Simpson's C' gives a concave information curve, like Shannon's entropy. (Figure 3) shows that entropy and negentropy; and diversity and dominance are negatively linearly correlated, and thus can be used as complementary community attributes. The diversity decreases with the increase of dominance as shown by (Figure 3). Dominance will be maximum when diversity approaches towards unity, although diversity of community consisting of more than one species will be maximum if all the species have an equal number of individuals. The negentropy characterising with organized actions of the control subject eradicates ambiguity (entropy) and it is the quantitative information measure. The removing of the ambiguity is articulated through the alterations of conditions that executed on the system and its entropy. The protective of system structure strength is a fight against entropy, which reveals aging process in technical systems. The requisite to upsurge the negentropy is the requirement to recompense the entropy as much as the entropy can be reduced itself. The problem solution of the removal ambiguity will permit to plan actions to decrease entropy established on the negentropy principle of Brillouin's information about the structural system alterations. A negative change in entropy refers to increasing orderness thereby increasing the diversity of community. The possibility of such an occurrence seems to break the laws of thermodynamics, but that  law refers to an isolated system, not each individual part of the system. For example, when our cells convert ADP and phosphate into ATP, the product is more ordered than the reaction and a negative change in entropy has happened. The entire system, however, has become more disordered because the cell has to convert glucose, an ordered compound, into water and carbon dioxide. The entire system, therefore, obeys the second law of thermodynamics (Martin et al., 2013). (Figure 4) gives the binary information plot between the probability, and Simpson's diversity (concave) and dominance (convex) indices. Since Brillouin's index uses the number of individuals of different species instead of probability, we have plotted binary information function for Brillouin's diversity and dominance as defined in (Table 2) and ( Figure 5), using the number of individuals (n) on a 0-10 scale, instead of probability (0-1). It is seen that Brillouin's diversity and dominance give typical concave curve for diversity and convex for dominance. From ( Figure  5), it was found that if Brillouin's diversity increases then Brillouin's dominance decreases and both are inversely related with each other. In initial phase the Brillouin's diversity was increased but dominance decreases and after that at the end phase Brillouin's diversity decreases while Brillouin's dominance increases.
In order to understand the behavior of diversity and dominance attributes under different situations, data were created using hypothetical communities (Tables 3-5). (Table 3) presents 5 communities, each community having a unique species not present in any other community. There is an increase in diversity due to Shannon's, Simpson's inverse information and Brillouin's entropies in the pooled community. But  as expected, the negentropy-based dominance indices did not change in Shannon's, Simpson's inverse and Brillouin's models. (Table 4) consisting of the same species in individual and pooled communities shows that Shannon's and Simpson's inverse indices due to entropy and negentropy do not change in pooled community. If the number of species are equal in all the communities, the sum of β diversity and β dominance is zero for Shannon's, Simpson's and Simpson's inverse indices (Table 5). (Table 6) is an example of the most common situation, where both the number of species and number of individuals per species are different in different communities. The sum of entropy and negentropy for all the dominance and diversity indices is additive. (Table 7) gives number of individuals of species present in the river-side vegetation along river Beas, flowing downstream from Beas 31.51 N, 75.28 E -Goindwal Sahib 31.68 N, 75.13 E (about 36 km) and then to Harike wetland 31.17 N, 75.20 E (about 41 km). The distances between the three sites along the river from Beas to Goindwal Sahib and then to Beas, were 36 km and 41 km, respectively. Harike wetland a man-made lake situated at the confluence of two rivers: Sutlej and Beas, and is Ramsar site. River Beas is a relatively less polluted river and harbors a threatened species of dolphin, Platanista minor. The quadrats of size 100 cm × 100 cm were laid down arbitrarily at each site. The methodology applied was adapted from Kumar et al. (2018). The order of diversity indices used was Harike > Beas > Goindwal Sahib. For dominance, the order was Goindwal Sahib > Beas > Harike. The combined results of diversity and dominance indices showed the trend as Harike > Beas > Goindwal Sahib for Shannon's diversity and Simpson's inverse diversity, however, for Simpson's diversity the value remains constant. For Brillouin's diversity index of dominance, the trend obtained is as: Harike > Goindwal  I  10  ----10  II  -10  ---10  III  --10  --10  IV  ---10  -10  V  ----10   Sahib > Beas. The results clearly indicate that diversity indices are better in contrast to dominance. Furthermore, the application of both in combination better elucidated the ecological information. (Table  7) shows the method of calculation, and relations among alpha, beta and gamma dominance and diversity indices.

Discussion
We have attempted to relate the well-studied indices of diversity and less studied dominance indices through energy-entropy relations ( Figure 6). ( Figure  6) showed the different stages for conversion of energy into entropy. When energy is utilised then entropy is equals to H' = E'max -E' = H'max -E', and when system shows negentropy then energy equals to E' = E'max -H' = H'max -H'. When entropy shows order, in that case the maximum energy is equals to the sum of negentropy and entropy, and when entropy shows disordered, then maximium entropy is equal to the sum of negentropy and entropy. Palaghianu (2014) developed BIODIV software and compared diversity measures, and suggested that Shannon's and Simpson's indices are better measures for diversity evaluation and opined that Simpson's indices for dominance and diversity evaluation have more flexibility for ecological interpretation. Justus (2011) also opined that various diversity indices employed for the study of communities, Shannon's and Simpson's indices are more popular. But based on certain criteria, the author proved that Simpson's indices perform better than that of Shannon's index. Brillouin's index is also extensively used as an index of diversity. Therefore, we have taken Shannon's, Simpson's and Brillouin's indices to develop dominance indices for our analysis at alpha, beta and gamma levels. Most of the β-diversity indices used in literature are based on the presence or absence of species in the samples. But we have used entropynegentropy relations which are based on both the number of species and number of individuals per sample in our study. Koleff et al. (2003) listed 24 beta diversity indices using data on the presence or absence  I  10  10  10  10  10  50  II  ------III  ------IV  ------V  -----  of species in quadrats, and recommended that the indices which exhibit homogeneity property under all circumstances perform better. Attempts to measure inter-habitat spatial diversity between two habitats separated by a distance (L), were made by Margalef (1958) with the equation (Sherwin & Prat, 2019), where H is the Brillouin's entropy. H is the average information per individual and is given as, where, N is the total number of individuals of all the species, N i is the number of individuals of different species, and K is the number of species. Buzas and Hayek (1996); Buzas & Hayek (2005) decomposed diversity (H) into two components, maximum and additive residual (E). The residual component is a measure of evenness and an inverse measure of richness.

E ¼ H max À E obs:
It is seen from the study that negentropy can be used as a measure of dominance of a community. Entropy measures the uncertainty of a system, whereas negentropy measures its certainty (De Vries & Geva, 2009). Jost (2007) stated that diversity is essentially partitioned into alpha, beta and gamma components. The three diversities are related either by additive law γ ¼ α þ β ð Þ, or by Whittaker's multiplicative law γ ¼ αβ ð Þ. When the diversity indices are converted to number equivalents, or effective number of species, the multiplicative law is better. The best computational model for Simpson's dominance and diversity is additive model (γ = α + β). Simpson's β dominance and β diversity are calculated using the relation (γ -α), which can be applied to both single species and multispecies communities. The sum of Simpson's β dominance and diversity is zero. The sum of Simpson's dominance and diversity for α and beta diversities is 1. For communities having equal number of species, the sum of β add (dominance) and β add (diversity) is zero. Beck et al. (2013) hypothesised that rare species are less represented in small sample and underestimate their importance, thus affecting the robustness of the diversity evaluation. It is also seen that Harike wetland has higher diversity than Beas and Goindwal. Harike wetland has more favorable conditions than the other sides. Therefore, larger samples can produce better interpretation. It is therefore evident negentropy can be used as an index of dominance for a diversity index based on entropy of the community. We can extend the proposed negentropic dominance indices for community analysis at α, β and γ levels to provide better interpretation of the community structure.

Conclusions
We have proposed negentropic indices of dominance for Shannon's entropy, Simpson's information, Simpson's inverse diversity and Brillouin's entropy. Binary entropy functions give concave diversity curves, whereas binary negentropy functions give convex energy curves for dominance. Alpha negentropic index of dominance, α(E'), may be defined as the average dominance of M communities: where E' j is negentropy of the j th community. Negentropic β index of dominance, β(E') of a landscape, may be defined as, , is gamma negentropic dominance index of the landscape consisting of M communities. Shannon's and Simpson's indices are more consistent at beta and gamma levels. The results of a case study on the Beas river indicate that on the basis of diversity indices Harike recorded maximum diversity followed by Beas and Goindwal Sahib. Based upon dominance, the Goindwal Sahib recorded maximum dominance of species, while Beas and Harike found low dominance. However, the combined results of dominance and  I  2  54  3  51  2  112  II  8  2  23  -7  40  III  21  1  61  -12  95  IV  1  ---34  35  V  -2  --2   diversity indices followed the trend as Harike > Beas > Goindwal Sahib for Shannon's diversity and Simpson's inverse diversity, nevertheless, for Simpson's diversity the value remains constant. For Brillouin's diversity index of dominance, the Harike recorded maximum diversity in contrast with Goindwal Sahib and Beas. Finally we can conclude that Harike wetland has higher diversity than Beas and Goindwal Sahib as revealed by results. It is therefore obvious negentropy may be applied as an index of dominance for a diversity index based on entropy of the community. We can extend the proposed negentropic dominance indices for community analysis at α, β and γ levels to provide better explanation of the community structure. The inferences obtained from the results of case study clearly revealed that diversity indices better explained the ecological information; however, in combination with dominance indices better results were obtained. 1 Notes 1. K: total number of species; α: average number of species; N: number of samples; g(S): species gained along gradient; l(S): species lost along gradient.